GgaEX1052178 @ galGal3
Exon Skipping
Gene
ENSGALG00000016094 | SFXN5
Description
NA
Coordinates
chr4:93360341-93361794:+
Coord C1 exon
chr4:93360341-93360394
Coord A exon
chr4:93360807-93360863
Coord C2 exon
chr4:93361729-93361794
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTATTTCCTCTGTAGTGG
3' ss Score
7.89
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTTGTTGGTCTTCTTCTGCCCAACCAGACGATAGCATCCACTGTGTTTTGGCAG
Seq A exon
TGGTTGAATCAGAGCCACAATGCGTGCGTCAACTATGCAAACCGCAACGCGACAAAG
Seq C2 exon
CCTTCTCCGACGTCCAAGTTCATCCAGGGCTACTTGGGAGCTGTCATAAGTGCTGTCTCAATAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016094-'9-20,'9-19,10-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(11.0=100)
A:
PF0382012=Mtc=FE(11.7=100)
C2:
PF0382012=Mtc=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTTGGTCTTCTTCTGCCCA
R:
ATTGAGACAGCACTTATGACAGCT
Band lengths:
116-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]