RnoEX0080187 @ rn6
Exon Skipping
Gene
ENSRNOG00000037871 | Sfxn5
Description
sideroflexin 5 [Source:RGD Symbol;Acc:628706]
Coordinates
chr4:117036343-117049564:-
Coord C1 exon
chr4:117049511-117049564
Coord A exon
chr4:117048712-117048768
Coord C2 exon
chr4:117036343-117036433
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTTGTTGCCTTCAGTGG
3' ss Score
8.62
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTCGTGGGACTTCTCTTGCCTAACCAGACCCTGGCATCCACTGTCTTCTGGCAG
Seq A exon
TGGCTGAACCAGAGCCATAATGCCTGTGTCAACTATGCAAACCGCAATGCTACTAAG
Seq C2 exon
GTGGGCCTTAATGTGCTGGTTCAGAAAGCAAACAAGTTCACTCCAGCCACTCGCCTTCTCGTGCAGAGATTTGTACCCTTCCCTGCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037871_MULTIEX1-3/6=2-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(11.3=100)
A:
PF0382012=Mtc=FE(12.0=100)
C2:
PF0382012=Mtc=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGGGACTTCTCTTGCCTA
R:
ACTGCAGGGAAGGGTACAAATC
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]