DreEX0065743 @ danRer10
Exon Skipping
Gene
ENSDARG00000026137 | sfxn5b
Description
sideroflexin 5b [Source:ZFIN;Acc:ZDB-GENE-050706-107]
Coordinates
chr14:46332035-46335324:+
Coord C1 exon
chr14:46332035-46332088
Coord A exon
chr14:46334969-46335025
Coord C2 exon
chr14:46335259-46335324
Length
57 bp
Sequences
Splice sites
3' ss Seq
CCTGAATTTCTCTCCGGCAGTGG
3' ss Score
6.03
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
GTTGTTGGTCTTCTCCTTCCTAACCAGACTTTGGCCTCCACTGTTTTCTGGCAG
Seq A exon
TGGCTGAACCAGAGTCACAATGCATGTGTGAACTACGCCAACCGCAACGCCACAAAG
Seq C2 exon
CCAACGCCAACCTCAAAGTTTATTCAGGGATACGTGGGAGCCGTGACCAGCGCTGTTTCTATTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026137_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(5.5=100)
A:
PF0382012=Mtc=FE(5.8=100)
C2:
PF0382012=Mtc=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTTGGTCTTCTCCTTCCT
R:
ATAGAAACAGCGCTGGTCACG
Band lengths:
116-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]