BtaEX0032198 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018555 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
Coordinates
chr11:11426859-11462405:+
Coord C1 exon
chr11:11426859-11426912
Coord A exon
chr11:11427881-11427937
Coord C2 exon
chr11:11462290-11462405
Length
57 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCCTTTGCCTTTCAGTGG
3' ss Score
10.46
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTTGTTGGTCTTCTCTTGCCCAATCAGACATTGGCGTCCACTGTCTTCTGGCAG
Seq A exon
TGGCTGAACCAGAGCCACAACGCCTGTGTCAACTATGCAAACCGCAACGCTACCAAG
Seq C2 exon
CCAGCGCCAATATCTGCAACGTGGTTCTGATGCGATACGGGGAGCTGGAGGAGGGAATTGACGTCTTGGACGGTGATGGCAACCTCGTGGGCTCCTCCAAGATCGCCGCCAGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018555_MULTIEX2-4/8=3-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(7.7=100)
A:
PF0382012=Mtc=FE(8.2=100)
C2:
PF0382012=Mtc=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGACATTGGCGTCCACTG
R:
GATCTTGGAGGAGCCCACGAG
Band lengths:
136-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development