MmuEX0042006 @ mm10
Exon Skipping
Gene
ENSMUSG00000033720 | Sfxn5
Description
sideroflexin 5 [Source:MGI Symbol;Acc:MGI:2137681]
Coordinates
chr6:85267872-85269963:-
Coord C1 exon
chr6:85269910-85269963
Coord A exon
chr6:85269098-85269154
Coord C2 exon
chr6:85267872-85267937
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTTGTTGCCCTCAGTGG
3' ss Score
9.26
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGGTGGGACTTCTCTTGCCTAACCAGACGCTGGCATCCACTGTCTTCTGGCAG
Seq A exon
TGGCTGAACCAGAGCCATAATGCCTGTGTCAACTATGCAAACCGCAATGCTACCAAG
Seq C2 exon
CCTTCACCTGCATCCAAGTTCATCCAGGGCTACCTGGGCGCTGTCATCAGTGCTGTTTCCATTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033720-'27-18,'27-15,28-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.095 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(11.5=100)
A:
PF0382012=Mtc=FE(12.2=100)
C2:
PF0382012=Mtc=FE(14.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGGACTTCTCTTGCCTA
R:
GAAACAGCACTGATGACAGCG
Band lengths:
112-169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types