DreEX0065905 @ danRer10
Exon Skipping
Gene
ENSDARG00000104555 | sh2d3cb
Description
SH2 domain containing 3Cb [Source:ZFIN;Acc:ZDB-GENE-040426-1052]
Coordinates
chr5:64452296-64461845:-
Coord C1 exon
chr5:64461806-64461845
Coord A exon
chr5:64455615-64455743
Coord C2 exon
chr5:64452296-64452729
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCATTTATGATTTCCTTTAGTTT
3' ss Score
6.81
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCATTCGGGTTCCATGGAAAACAGTGACGTTTATGTAAAG
Seq A exon
TTTTCTAAAGGCACACACCAGCCGAGCTCCCCACCAGACAAACTAAAGCAGGAGTTGGAGAAAGAGCTGAAACTGAGCAGCTGTAATTTATCAAGTCATGGTTGGTACCATGGTCGTATACCCTGGGAG
Seq C2 exon
GTGTCTGAGTCTCTTGTGCAACAGGAAGGAGATTTTTTAATCCGTGACTCCCTCTCTAGCATTGGAGATTATGTCTTAACCTGCCGCTGGAACCAGAAAGCTCTTCATTTCCTCATCACTAAAGTTTTGCTCAGATCTTATGACACGTACACTCGAGTGCAGTACATTCTGGAGGAGGAGACATTTTATTCTGTCCCGGCGCTGGTTCATTCTTATGTTGGAAATAAAAGGCCTCTGACGAAGAAGAGCGCTGCCTACATTTACTCTCCTGTTAACAGGACACTTCCACTCAGATACCTGGAAACCATGTTTGGGCTGCCGAGTGTGGAGAACAGTCCGGTAAACTCACCAAGCACGCAGAAGGGAAGCCAGAAGAAAAGGGAAAGCGTCGCTGTGACAGAGGCTCTGGAAATCGAGCTGATAAGACCGCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104555_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.249 C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
PF0001719=SH2=PU(9.9=18.6)
C2:
PF0001719=SH2=PD(87.7=49.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTTCCATGGAAAACAGTGA
R:
ATAAGAATGAACCAGCGCCGG
Band lengths:
251-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]