DreEX0065942 @ danRer10
Exon Skipping
Gene
ENSDARG00000088202 | sh3d19
Description
SH3 domain containing 19 [Source:ZFIN;Acc:ZDB-GENE-050522-481]
Coordinates
chr1:23710321-23712249:-
Coord C1 exon
chr1:23712106-23712249
Coord A exon
chr1:23711123-23711198
Coord C2 exon
chr1:23710321-23710451
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTATGGGTTTTACAGAAA
3' ss Score
7.57
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AAAAATGAAGTCCTTGTCTTACTCGAGGAGTTAGACAGCAGAACATTTGAATGCCAAGCAGGAAACACCAAGGGCACAGTGCAGAAAAGTCATATGAAGATAATCACACCTTTAACAGATTTATCCAGCAATTCACTACCACAG
Seq A exon
AAAACCAGTTCCTTTAGAGGAATGGGAGGAAATGCTGGATCTCTACAAGTGGAAGCCCTGTATGACTTCACTCCAG
Seq C2 exon
CGGGGCCAGGAGAGCTGGCTTTAAAAGCCGGTGATGTGGTGTCTAATGTAGAACAGCTCGACGATGATTGGTACATGGGAACATGCAGAAATGCCACTGGATTCTTCCCCATTAACTATGTTAAGGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088202-'18-20,'18-19,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=0.308 C2=0.000
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PD(63.0=70.8)
A:
PF0001823=SH3_1=PU(17.4=30.8)
C2:
PF0001823=SH3_1=PD(80.4=84.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCAAGCAGGAAACACCA
R:
ACCAATCATCGTCGAGCTGTT
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]