RnoEX0080452 @ rn6
Exon Skipping
Gene
ENSRNOG00000011752 | Sh3d19
Description
SH3 domain containing 19 [Source:RGD Symbol;Acc:1304885]
Coordinates
chr2:185414224-185418531:+
Coord C1 exon
chr2:185414224-185414364
Coord A exon
chr2:185417415-185417487
Coord C2 exon
chr2:185418401-185418531
Length
73 bp
Sequences
Splice sites
3' ss Seq
AGCCCTGTTTCTCCCCTCAGGGG
3' ss Score
10.81
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
CGTGGAGATGTACTTGTGATCCTGAAACAGGCAGAGAACAATTACCTGGAGTGCCGGCGGGGAGAAGGCACCGGCAGAGTCCACCCGTCCCAGATGAAGATTGTCACTCCCCTGGACGAGCACCCCAGAAGCAGACCTAAC
Seq A exon
GGGTCAGGCCACACTCAGAAGCCTGTAGACAGTGGCGCTCCTCACGCGGTGGCTCTTCACGACTTCCCAGCGG
Seq C2 exon
AGCAAGCCGATGATCTGAGTCTCACATCTGGAGAGATTGTTTATCTTCTCGAAAAAATAGATGCAGAGTGGTACAGAGGGAAATGTAGGAACCAGACTGGAATTTTTCCTGCCAATTACGTCAAAGTCGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011752-'28-31,'28-30,29-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.617 A=0.800 C2=0.000
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PD(63.0=72.3)
A:
PF0001823=SH3_1=PU(17.4=32.0)
C2:
PF0001823=SH3_1=PD(80.4=84.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGTCACTCCCCTGGACGA
R:
CGACTTTGACGTAATTGGCAGG
Band lengths:
172-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]