MmuEX0042175 @ mm10
Exon Skipping
Gene
ENSMUSG00000028082 | Sh3d19
Description
SH3 domain protein D19 [Source:MGI Symbol;Acc:MGI:1350923]
Coordinates
chr3:86107212-86114917:+
Coord C1 exon
chr3:86107212-86107352
Coord A exon
chr3:86113106-86113178
Coord C2 exon
chr3:86114787-86114917
Length
73 bp
Sequences
Splice sites
3' ss Seq
AGCCCTGCTTTTCCCCCAAGGAT
3' ss Score
7.32
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CGTGGGGATGTCCTTGTGATCCTGAAGCAGGCAGAAAATAATTACTTGGAATGCCAACGGGGAGAAGGCACCGGCAGAGTCCACCCATCCCAGATGAAGATTGTCACTCCCCTGGACGAGCGCCCGAGAGGCAGACCTAAC
Seq A exon
GATTCAGGCCACAGTCAGAAGCCTGTAGACAGTGGTGCTCCTCACGCTGTGGCTCTTCATGATTTCCCAGCAG
Seq C2 exon
AGCAAGCTGACGATCTGAGTCTCACATCTGGAGAGATTGTTTATCTTCTCGAAAAAATAGATGCAGAGTGGTACAGAGGGAAATGTAGGAACCAGACTGGCGTGTTTCCTGCCAATTACGTCAAAGTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028082_MULTIEX2-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.626 A=0.840 C2=0.000
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PD(63.0=72.3)
A:
PF0001823=SH3_1=PU(17.4=32.0)
C2:
PF0001823=SH3_1=PD(80.4=84.1)
Main Skipping Isoform:
ENSMUST00000182666fB3676
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCCACCCATCCCAGATG
R:
ACGCCAGTCTGGTTCCTACAT
Band lengths:
169-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types