HsaEX6086471 @ hg38
Exon Skipping
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:151137732-151144050:-
Coord C1 exon
chr4:151143910-151144050
Coord A exon
chr4:151139775-151139847
Coord C2 exon
chr4:151137732-151137862
Length
73 bp
Sequences
Splice sites
3' ss Seq
AGCCCTTTTCTCCCCCTAAGGAT
3' ss Score
7.84
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CGTGGGGATGTACTTGTGATGCTGAAGCAGACGGAAAATAATTACTTGGAGTGCCAAAAGGGAGAAGACACTGGCAGAGTTCACCTGTCTCAAATGAAGATTATCACTCCACTTGATGAACATCTTAGAAGCAGACCAAAC
Seq A exon
GATCCAAGCCACGCTCAGAAGCCTGTTGACAGTGGTGCTCCTCATGCTGTCGTTCTTCATGATTTCCCAGCAG
Seq C2 exon
AGCAAGTTGATGATTTGAACCTCACTTCTGGAGAAATTGTTTATCTTCTGGAGAAGATAGATACAGATTGGTACAGAGGGAACTGTAGAAACCAGATTGGCATATTTCCTGCCAACTATGTCAAAGTGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686-'40-50,'40-48,41-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.517 A=0.463 C2=0.000
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PD(63.0=72.3)
A:
PF0001823=SH3_1=PU(17.4=32.0)
C2:
PF0001823=SH3_1=PD(80.4=84.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGAGTTCACCTGTCTCA
R:
GCAGGAAATATGCCAATCTGGT
Band lengths:
182-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains