GgaEX6034184 @ galGal4
Exon Skipping
Gene
ENSGALG00000010081 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:32696774-32698316:-
Coord C1 exon
chr4:32698239-32698316
Coord A exon
chr4:32697220-32697292
Coord C2 exon
chr4:32696774-32696904
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTGAATTTGTTTGTTGCCAGGAT
3' ss Score
6.79
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
AGGGAAACTGGCAAAGTTCCTCTGTCTCCTATGAAGATAATGACTTCCTTTGCTGAGTATCTAAAAGATGGGCGAAAG
Seq A exon
GATTCAAACAGCTCTCCAAAAGTTTCTGACACAAGTGCTCCCCATGCTGTAGCACTGCATGATTTTTCTGCGG
Seq C2 exon
AGCACGCTGATGACTTGGACCTTCGTTCTGGAGATACTGTTTATCTTTTGGAGAGAGTTGATGCCAAGTGGTACAGAGGAAAATGTGGGAGTCGCACAGGAATATTTCCTGCCAGCTTTGTTAAAGTGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081-'31-35,'31-34,33-35=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=0.520 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0001823=SH3_1=PU(17.4=32.0)
C2:
PF0001823=SH3_1=PD(80.4=84.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAAGTTCCTCTGTCTCC
R:
GTGCGACTCCCACATTTTCCT
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]