DreEX0066610 @ danRer10
Exon Skipping
Gene
ENSDARG00000024775 | si:ch211-129c21.1
Description
si:ch211-129c21.1 [Source:ZFIN;Acc:ZDB-GENE-030131-5796]
Coordinates
chr22:22294794-22297004:-
Coord C1 exon
chr22:22296782-22297004
Coord A exon
chr22:22296484-22296599
Coord C2 exon
chr22:22294794-22294957
Length
116 bp
Sequences
Splice sites
3' ss Seq
AGGTTATTTTTTTCCATCAGCAA
3' ss Score
4.78
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
TGTATCAACAACGCAGCGAGGACTTCAGGAATAAAAAGTTCGATGAATATCCCTGATAAAACCCTCCAGTTCATCCGAGACCGTCCTCTAATGGATGATGCCGTTCATCCAATTACAGGAAAACCACTGCTGCTCAAAAGAGGGCCCCTGTTGACGCGTCTCGTTGTAGATATGGTAACGGCAGCAGACGGACAGTCCTATCCCATGATGTTTGTGGGCACAG
Seq A exon
CAAACGGTTATGTGCAGAAAGCAGTGAATTATGATGGAGAAATGCACATCATTGAAGAGGTCAAACTGTTTGAGAGTGAAGAGGCTATTGACGTCCTCCGACTTCATCAGAATCAG
Seq C2 exon
TTGTATGCAGGCTCTGCATCCGGGGTCGTCCAGATGCCTGTCAGCAACTGCAGTCGCTATTCTTCCTGTCTGGACTGTGTGCTGGCCAGAGACCCATACTGTGCCTGGGACGTCCCAGCTCAACGCTGTTCTAGATTTCCCGCATCAACTGAGCATGCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024775-'15-18,'15-17,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.1=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0143720=PSI=PU(70.9=70.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAAACCACTGCTGCTCA
R:
GCGGGAAATCTAGAACAGCGT
Band lengths:
251-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]