RnoEX6039321 @ rn6
Exon Skipping
Gene
ENSRNOG00000016254 | Sema4c
Description
semaphorin 4C [Source:RGD Symbol;Acc:1562837]
Coordinates
chr9:43131445-43132960:-
Coord C1 exon
chr9:43132738-43132960
Coord A exon
chr9:43132538-43132650
Coord C2 exon
chr9:43131445-43131602
Length
113 bp
Sequences
Splice sites
3' ss Seq
TATTCCCCTCACCCCTCCAGGAG
3' ss Score
8.73
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
TGCATCAACAACTGGCACCGAGACAATGGCTACACCAGTTCTCTGGAGCTGCCCGACAACACCCTTAACTTCATCAAGAAGCACCCGCTGATGGAGGAACAGGTGAAGCCTCGGTTGGGCCGCCCCCTACTTGTAAAGAAGAACACGAACTTCACACATGTGGTGGCCGACAGGATCCTAGGACTTGATGGCGCCACCTATACAGTGTTGTTCATTGGTACAG
Seq A exon
GAGATGGTTGGCTGCTGAAAGCTGTAAGCCTGGGGCCCTGGATCCACATGGTGGAGGAGCTGCAGGTGTTTGACCAGGAGCCAGTGGAAAGTCTGGTGCTGTCTCAGAGCAAG
Seq C2 exon
AAGGTGCTGTTTGCTGGCTCCCGTTCTCAACTGGTTCAGCTGTCGCTGGCGGACTGCACGAAGTATCGCTTCTGTGTAGACTGTGTCCTTGCCAGGGACCCCTACTGTGCCTGGAATGTCAACACCAGCCGCTGTGTGGCCACCGGTGGTCATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016254-'27-17,'27-16,28-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.2=100)
A:
PF0140314=Sema=FE(8.6=100)
C2:
PF0143720=PSI=PU(37.6=66.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGAGACAATGGCTACACC
R:
AGCTGAACCAGTTGAGAACGG
Band lengths:
249-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]