DreEX0065091 @ danRer10
Exon Skipping
Gene
ENSDARG00000079611 | sema4c
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:ZFIN;Acc:ZDB-GENE-080303-16]
Coordinates
chr5:14033413-14036375:-
Coord C1 exon
chr5:14036162-14036375
Coord A exon
chr5:14033706-14033821
Coord C2 exon
chr5:14033413-14033570
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTGTTTGCCGTTCAGCGG
3' ss Score
6.49
5' ss Seq
AAAGTAATT
5' ss Score
3.64
Exon sequences
Seq C1 exon
TGCATCACCAATTTTGACAGGGAAAATGGCTACAACAGTTCTCTCCAGCTGCCTGACGCCACGCTCAACTTTGCCAAGAAGCACCCGCTGATGGAACTCAGGGCTGAAGCTCGCCCTCTGCTGCTGACTAAAGGCATCAACTTCACCCGATTGGCTGTGGACCGAGTGAGCTCACTGGACCAGAGATCCTACAACATGCTCTTCATAGGCACAG
Seq A exon
CGGACGGATGGCTCCAGCGTGTGGTGATTTTGGGTTCAGAGGCTCATGTGATAGAAGAGATCCAGCTGTTTGATCGACAGCAACCGGTGGACAGCCTCACCGTCTCCCACAGCAAA
Seq C2 exon
AAGTATTTGTACATTGGCTCCAGGTCTGAAGTTCTTCAGCTGCCCTTGGCAAACTGCAGCCGGTACCATTCACAGCCAGACTGCCTGCTGTCCAGAGACCCGTACTGTGCCTGGGACAGCGAGGGACGAGCTTGTGTCCGCATCGACCTCCATCGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079611-'12-15,'12-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(16.5=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0150811=Paramecium_SA=WD(100=69.8),PF0143720=PSI=PU(71.4=66.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGTTCTCTCCAGCTGCC
R:
GAATGGTACCGGCTGCAGTTT
Band lengths:
253-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]