HsaEX6014591 @ hg38
Exon Skipping
Gene
ENSG00000168758 | SEMA4C
Description
semaphorin 4C [Source:HGNC Symbol;Acc:HGNC:10731]
Coordinates
chr2:96861737-96864148:-
Coord C1 exon
chr2:96863926-96864148
Coord A exon
chr2:96863682-96863794
Coord C2 exon
chr2:96861737-96861894
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTCTGCACCCCCCAGGAG
3' ss Score
7.85
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
Exon sequences
Seq C1 exon
TGCATTAACAACTGGCATCGGCGCCACGGCTACACCAGCTCCCTGGAGCTACCCGACAACATCCTCAACTTCGTCAAGAAGCACCCGCTGATGGAGGAGCAGGTGGGGCCTCGGTGGAGCCGCCCCCTGCTCGTGAAGAAGGGCACCAACTTCACCCACCTGGTGGCCGACCGGGTTACAGGACTTGATGGAGCCACCTATACAGTGCTGTTCATTGGCACAG
Seq A exon
GAGACGGCTGGCTGCTCAAGGCTGTGAGCCTGGGGCCCTGGGTTCACCTGATTGAGGAGCTGCAGCTGTTTGACCAGGAGCCCATGAGAAGCCTGGTGCTATCTCAGAGCAAG
Seq C2 exon
AAGCTGCTCTTTGCCGGCTCCCGCTCTCAGCTGGTGCAGCTGCCCGTGGCCGACTGCATGAAGTATCGCTCCTGTGCAGACTGTGTCCTCGCCCGGGACCCCTATTGCGCCTGGAGCGTCAACACCAGCCGCTGTGTGGCCGTGGGTGGCCACTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168758-'24-27,'24-23,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.2=100)
A:
PF0140314=Sema=FE(8.6=100)
C2:
PF0143720=PSI=PU(38.0=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACCCGACAACATCCTCA
R:
ATACTTCATGCAGTCGGCCAC
Band lengths:
243-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains