GgaEX1051660 @ galGal4
Exon Skipping
Gene
ENSGALG00000026957 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr6:22628773-22629419:-
Coord C1 exon
chr6:22629197-22629419
Coord A exon
chr6:22629008-22629123
Coord C2 exon
chr6:22628773-22628924
Length
116 bp
Sequences
Splice sites
3' ss Seq
CCTCACCACCCCGTCTGCAGGGG
3' ss Score
7.52
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGCATCACGGACAGCTCTCGCCGCAAGGGCTACAACTCGTCACAGGATCTGCCCAACAGTGTGCTGGACTTTGTCAAGCTGCACCCGCTGATGTTCGAGGAGGTGCAGCCGGCGGGCGGTGAGCCACTGCTGGTGAAGAGGAGCGTGGCATACAGCCGCCTGGCAGTGGACCGAGTGCAGGCCCTCGACGGGCGCTCCTACGACGTGCTCTTCATGGGGACGG
Seq A exon
GGGACGGCTGGCTGCACAAGGCCGTGGTGCTGGGCTCCAGCCTCCACATCATTGAGGAGGTGCAGGTGTTCCGGGACCCGCAGCCCGTGGAGACGCTGGTGGTGTCCCGCAGACAG
Seq C2 exon
AGGAGCCTGTATGTGGGGGCTGCTAGCGGAGTCCTGCAGGTGCCCCTGGCCTCCTGCGCCAGGTACAGCTCCTGCTATGACTGCATCCTCGCCCGGGATCCCTACTGCGCCTGGGACGGCTGGGCCTGCCGTGACACGGCCAGCGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026957-'13-18,'13-17,14-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.1=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0143720=PSI=PU(63.5=64.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTTTGTCAAGCTGCACC
R:
GGATGCAGTCATAGCAGGAGC
Band lengths:
247-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]