BtaEX0031886 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018604 | SEMA4G
Description
Bos taurus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G (SEMA4G), mRNA. [Source:RefSeq mRNA;Acc:NM_001101117]
Coordinates
chr26:21685822-21686889:+
Coord C1 exon
chr26:21685822-21686044
Coord A exon
chr26:21686451-21686566
Coord C2 exon
chr26:21686714-21686889
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTCTGCCATTCCCATACCAGCTG
3' ss Score
7.01
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
TGCATTACAGATTCACTGCGAAGCCGAGGCTACAACTCATCCCAGGACTTGCCATCTCTGGTTCTGGACTTTGTGAAGTTACACCCACTGATGGCTCGGCCTGTGGTGCCCACACGCGGACGGCCCCTGCTGCTCAAGCGCAGTGTGCGCTACACACACCTCACGGGGACACCTGTCAGCACACCTGCCGGACCCACCTATGACCTGCTCTTTCTGGGCACAG
Seq A exon
CTGATGGCTGGATCCACAAGGCTGTGGTCCTGGGCTCTGGGATGCACATTATTGAAGAGACACAGGTGTTAAAGGAGCCCCAGTCTGTGGAGAACCTGGTCATCTCTCCGATGCAG
Seq C2 exon
CATAGCCTCTACGTGGGGGCCCCAAGTGGCATCATCCAGCTACCACTGTCCAGCTGCTCCCGCTACCGCTCCTGCTATGACTGCATCCTGGCCCGGGACCCCTACTGTGGCTGGGACCCCAGCACCCATGCCTGCATGGTGACCACCACCATAGCCAACAGGTCCCAAAGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018604-'20-18,'20-17,21-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.051 C2=0.068
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.1=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0143720=PSI=PU(71.9=69.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTCATCCCAGGACTTGCC
R:
TGGACAGTGGTAGCTGGATGA
Band lengths:
243-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development