HsaEX0057131 @ hg38
Exon Skipping
Gene
ENSG00000095539 | SEMA4G
Description
semaphorin 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr10:100980122-100980920:+
Coord C1 exon
chr10:100980122-100980344
Coord A exon
chr10:100980578-100980693
Coord C2 exon
chr10:100980822-100980920
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTCTTTCCATACCAGCTG
3' ss Score
8.53
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
TGTATCACAGATTCATTGCGCAGCCAAGGCTACAATTCATCCCAAGACTTGCCATCCCTGGTCCTGGACTTTGTAAAGTTGCACCCACTGATGGCTCGGCCCGTTGTGCCCACACGTGGACGGCCCCTGCTGCTCAAGCGCAACATACGCTACACACACCTTACAGGGACACCTGTCACCACGCCTGCTGGACCTACCTATGACCTGCTCTTTCTGGGCACAG
Seq A exon
CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATTATTGAAGAGACACAAGTGTTCAGGGAGTCCCAGTCTGTGGAAAATCTAGTCATCTCTCTATTGCAG
Seq C2 exon
CACAGCCTCTATGTGGGGGCTCCTAGCGGAGTCATCCAGCTACCACTCTCCAGCTGCTCCCGCTACCGATCCTGCTATGACTGCATCTTGGCCCGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539-'20-21,'20-20,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.1=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0143720=PSI=PU(71.9=69.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTGGTCCTGGACTTTGT
R:
TGCAGTCATAGCAGGATCGGT
Band lengths:
255-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development