HsaEX0057131 @ hg19
Exon Skipping
Gene
ENSG00000095539 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:10735]
Coordinates
chr10:102739879-102740986:+
Coord C1 exon
chr10:102739879-102740101
Coord A exon
chr10:102740335-102740450
Coord C2 exon
chr10:102740925-102740986
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTCTTTCCATACCAGCTG
3' ss Score
8.53
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
TGTATCACAGATTCATTGCGCAGCCAAGGCTACAATTCATCCCAAGACTTGCCATCCCTGGTCCTGGACTTTGTAAAGTTGCACCCACTGATGGCTCGGCCCGTTGTGCCCACACGTGGACGGCCCCTGCTGCTCAAGCGCAACATACGCTACACACACCTTACAGGGACACCTGTCACCACGCCTGCTGGACCTACCTATGACCTGCTCTTTCTGGGCACAG
Seq A exon
CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATTATTGAAGAGACACAAGTGTTCAGGGAGTCCCAGTCTGTGGAAAATCTAGTCATCTCTCTATTGCAG
Seq C2 exon
GACAGCACTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGAGCAGCAGGGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539_MULTIEX2-2/3=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.364
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.1=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0143720=PSI=PD(26.3=68.2),PF138951=Ig_2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCAAGACTTGCCATCCC
R:
TGTATCCCTGCTGCTCTCACA
Band lengths:
247-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)