RnoEX6007538 @ rn6
Exon Skipping
Gene
ENSRNOG00000014650 | Sema4g
Description
semaphorin 4G [Source:RGD Symbol;Acc:1310436]
Coordinates
chr1:264747753-264748574:+
Coord C1 exon
chr1:264747753-264747975
Coord A exon
chr1:264748206-264748321
Coord C2 exon
chr1:264748414-264748574
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTTTGCCCTTTCTACATCAGCTG
3' ss Score
7.1
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
Exon sequences
Seq C1 exon
TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCTCAAGACTTGCCATCCCTCGTTCTGGACTTTGTGAAGTTGCACCCACTGATGGCTCGGCCTGTGGTACCCACACGTGGGCGGCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCATACCTGCTGGACCCACCTATGACCTGCTCTTTCTAGGCACAG
Seq A exon
CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATTATCGAAGAGATACAAGTGTTCAGGGAGTCCCAGTCTGTGGACAATCTAGTTATCTCACCGATGCAG
Seq C2 exon
CACAGCCTCTATGTGGGGGCTGCGAGTGGAGTCATCCAGTTTCCTCTGTCCAGTTGCTCACGCTACCGTTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCACCCATGCCTGCATGGTGGCCACCACCATAGCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014650-'18-22,'18-21,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.1=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0143720=PSI=PU(65.5=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGCCATCCCTCGTTCTG
R:
CATAGCAGGAACGGTAGCGTG
Band lengths:
257-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]