DreEX0067826 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47923079-47940387:-
Coord C1 exon
chr16:47940218-47940387
Coord A exon
chr16:47937268-47937424
Coord C2 exon
chr16:47923079-47923270
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTTTCTCTCCCCAGTTG
3' ss Score
12.12
5' ss Seq
CTAGTAAGA
5' ss Score
5.2
Exon sequences
Seq C1 exon
CTGAGTGCGGATCAACCGTGTCCAAAAACGCCGGCGTTCTGTTGTCCCCAAACTACCCTCGCAATTACGATAACAACCATGAGTGCATCTATAACATCCAAGTGCAAGCAGGAAAAGGAATCAACATCTCTGCCAGCAGCTTTCATCTGGCTCAAGGTGACGTTCTCAAG
Seq A exon
TTGTATGACGGTCCGGACAACACTGCAGATGTTCTAGGAGCTTTCTCTGGGTCCTCCATGTTGAGTCAGTCACTGACCAGCACGTCGAATCACCTGTGGCTTGAGTTTTATTCTGACCAAGAGGACACGGCTGAGGGATTCAAGCTTGCTTACACTA
Seq C2 exon
GTTTTGAACTTTCTCATTGTGACGAACCCGGTGTGCCTCAATTTGGATCCAAAGTCAGCGACCAAGGCCACTTTGCAGGCAGTGTGGTCACGTATCACTGTGATCCTGGATACAGTCTCCATGGCAGCAGCATTTTGAGATGCATGACGGGCGAGAGACGCACGTGGGACCATCCGCTCCCCTCCTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'24-25,'24-24,25-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(50.9=94.7)
A:
PF0043115=CUB=PD(47.2=94.3)
C2:
PF0008415=Sushi=WD(100=87.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAACCGTGTCCAAAAACGC
R:
GATACGTGACCACACTGCCTG
Band lengths:
256-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]