MmuEX1007614 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47888639-47914105:-
Coord C1 exon
chr15:47913936-47914105
Coord A exon
chr15:47899709-47899865
Coord C2 exon
chr15:47888639-47888830
Length
157 bp
Sequences
Splice sites
3' ss Seq
ATTGTAAATATATTTTGCAGATT
3' ss Score
6.87
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CTGAATGTGGTGCATCTGCAACAAATAACGAGGGAATTCTCCTCTCTCCAAATTACCCATTGAACTATGAAAACAACCACGAATGCATTTACAGCCTTCAGGTCCAAGCAGGAAAAGGCATCAATATTTCAGCCAGAACGTTTCATTTAGCTCAAGGGGATGTTCTTAAG
Seq A exon
ATTTATGATGGAAAAGATAAAACAACGCACCTACTGGGTGCTTTCACGGGTGCGTCTATGCGAGGACTGACACTAAGCAGCACATCAAATCAGCTCTGGCTAGAGTTTAATTCTGACTCTGAAGGGACAGATGAAGGCTTTCAACTTGTCTACACCA
Seq C2 exon
GTTTTGAACTTTCTCATTGTGAAGACCCAGGCATTCCACAGTTTGGATATAAGATCAGTGACCAAGGTCACTTTGCTGGCAGCACCATCATCTATGGATGCAATCCAGGCTATACTCTCCATGGAAGCAGCCTTCTGAAGTGCATGACTGGAGAGAGAAGGGCCTGGGACTACCCTCTACCTTCCTGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'68-36,'68-35,69-36
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(50.9=94.7)
A:
PF0043115=CUB=PD(47.2=94.3)
C2:
PF0008415=Sushi=WD(100=87.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGCCTTCAGGTCCAAGCA
R:
GGCCCTTCTCTCTCCAGTCAT
Band lengths:
245-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types