GgaEX6022111 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139150376-139168117:-
Coord C1 exon
chr2:139167948-139168117
Coord A exon
chr2:139157270-139157426
Coord C2 exon
chr2:139150376-139150567
Length
157 bp
Sequences
Splice sites
3' ss Seq
AAGTTGCATTTTTCTTACAGATC
3' ss Score
7.72
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CTGAATGTGGAGCCTCCACAACAAATAATGAAGGGATTTTACTGTCCCCCAATTATCCTCTTAACTATGAAAACAACCATGAATGTATTTATAGCATTCAGGTACAAGCAGGGAAAGGAATAAACATTTCTGCCAGAACATTTCATTTAGCTCAAGGAGATGTTCTTAAG
Seq A exon
ATCTATGATGGCAAAGACAATACTGCTCACCTGCTGGGTGCGTATACTGGTGCATCATTAAGAGGACTAACGCTAAGTAGTACTTCAAATCACTTATGGTTGGAATTCAACTCAGACATGGAGGGCACTGATGAAGGCTTTCAGCTTGTTTATACCA
Seq C2 exon
GTTTTGAACTTTCACATTGTGAAGACCCCGGTGTGCCCCAGTTTGGACATAAAATCAGCGACCAAGGTCACTTTGCTGGAAGCATTATCATTTATGGATGCAATCCAGGCTACACACTCCATGGAAGTAGCCTTCTAAAGTGTATGACTGGAGAAAGAAGGGCATGGGACTATCCTCTACCATCATGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(50.9=94.7)
A:
PF0043115=CUB=PD(47.2=94.3)
C2:
PF0008415=Sushi=WD(100=87.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATTCAGGTACAAGCAGGG
R:
TCCCATGCCCTTCTTTCTCCA
Band lengths:
247-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]