RnoEX0003313 @ rn6
Exon Skipping
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:87035614-87047392:-
Coord C1 exon
chr7:87047292-87047392
Coord A exon
chr7:87046597-87046753
Coord C2 exon
chr7:87035614-87035805
Length
157 bp
Sequences
Splice sites
3' ss Seq
ATTATAAATATATTTTTCAGATT
3' ss Score
7.48
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GTGCAGCTATCTTCTTTTGGTTTTGTTGAAAGAAGATTAATTTCTTCCTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG
Seq A exon
ATTTATGATGGAAAAGATAAAACAACGCACCTGCTGGGTGCTTTCACGGGAGCGTCTATGAGAGGGCTGACTCTGAGCAGCACATCAAATCAGCTCTGGCTAGAGTTTAATTCTGACTCTGAAGGGACAGATGAAGGCTTTCAACTCGTCTACACCA
Seq C2 exon
GTTTTGAACTTTCGCATTGTGAAGACCCAGGCATTCCACAGTTTGGATATAAGATCAGTGACCAAGGCCACTTTGCAGGCAGCACCATCATCTATGGATGCAATCCTGGCTACACTCTCCATGGAAGCAGCCTTCTCAAGTGTATGACCGGGGAGAGAAGGGCCTGGGACTACCCTCTGCCTTCTTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-'25-30,'25-29,26-30
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCTATCTTCTTTTGGTT
R:
ACACTTGAGAAGGCTGCTTCC
Band lengths:
244-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]