DreEX6074403 @ danRer10
Exon Skipping
Gene
ENSDARG00000077920 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr19:44868414-44883661:-
Coord C1 exon
chr19:44883492-44883661
Coord A exon
chr19:44878476-44878632
Coord C2 exon
chr19:44868414-44868605
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTGATCTTCTTGCTTTGCAGATC
3' ss Score
11.9
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CTGAGTGCGGCTCTTCTGTCATCAACAATGAAGGGATTCTGCTGTCACCCAATTACCCCATGAACTACGAGAACAACCACGAGTGCATTTACAGCATACAGGTGCAGGCTGGGAAAGGAATCAACATTTCGGCTAGAACCTTCCATCTGGCACAGGGGGACATCCTGAAG
Seq A exon
ATCTATGATGGTAAAGACAACGCGGCTCACATGCTGGGGGCCTTCACCGGCTCCTCCATGTTGGGTCTGACCCTGATCAGCACCTCCAATCACCTCTGGCTGGAGTTTTACAGTGATGCCGAGGCTACCGGAGAGGGCTTCAAACTGGTGTACTCCA
Seq C2 exon
GTTTTGAGCTGTCCCACTGCGAAGACCCCGGTGTGCCCCAGTTTGGCTTCAAAGTCAATGACCAGGGCCATTTCTCTGGCAGCACCATCACCTACAAGTGCGACCCCGGCTACACACTCCACGGCAGCGGCGTGCTCAAATGCATGACCGGAGAGAGACGCGCATGGGATAATGCTCTTCCTTCCTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077920-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(50.9=93.1)
A:
PF0043115=CUB=PD(48.1=96.2)
C2:
PF0008415=Sushi=WD(100=87.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAACAACCACGAGTGCAT
R:
TCTCCGGTCATGCATTTGAGC
Band lengths:
257-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]