HsaEX6081984 @ hg38
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr8:112556763-112587235:-
Coord C1 exon
chr8:112587066-112587235
Coord A exon
chr8:112573501-112573657
Coord C2 exon
chr8:112556763-112556954
Length
157 bp
Sequences
Splice sites
3' ss Seq
ATTATAAATATATTTTGCAGATT
3' ss Score
7.27
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CTGAATGTGGTGCATCTGCAACGAATAATGAAGGAATTTTGCTGTCTCCAAATTATCCACTCAACTATGAAAACAACCATGAATGCATTTATAGTATTCAGGTTCAAGCAGGAAAGGGAATCAATATTTCAGCCAGAACATTTCATTTAGCACAAGGAGATGTTCTTAAG
Seq A exon
ATTTATGATGGAAAAGATAAAACGACTCATCTACTAGGTGCTTTTACTGGTGCATCTATGCGCGGACTGACACTTAGTAGTACTTCAAATCAACTCTGGCTAGAATTTAATTCCGATACTGAAGGGACAGATGAAGGCTTTCAACTTGTGTATACCA
Seq C2 exon
GTTTTGAACTCTCACACTGTGAAGATCCTGGCATTCCACAATTTGGATACAAGATCAGTGACCAAGGCCACTTTGCTGGTAGCACCATCATTTATGGATGCAATCCAGGCTACACTCTCCACGGAAGTAGCCTTCTCAAGTGCATGACAGGGGAGAGAAGGGCATGGGACTATCCTCTGCCTTCCTGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'47-53,'47-52,48-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(50.9=94.7)
A:
PF0043115=CUB=PD(47.2=94.3)
C2:
PF0008415=Sushi=WD(100=87.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTCAAGCAGGAAAGGGA
R:
CAGAGGATAGTCCCATGCCCT
Band lengths:
251-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains