RnoEX6032187 @ rn6
Exon Skipping
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:87031525-87046753:-
Coord C1 exon
chr7:87046597-87046753
Coord A exon
chr7:87035614-87035805
Coord C2 exon
chr7:87031525-87031651
Length
192 bp
Sequences
Splice sites
3' ss Seq
AACTTCTCTTGCTCTCTCAGGTT
3' ss Score
9.95
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ATTTATGATGGAAAAGATAAAACAACGCACCTGCTGGGTGCTTTCACGGGAGCGTCTATGAGAGGGCTGACTCTGAGCAGCACATCAAATCAGCTCTGGCTAGAGTTTAATTCTGACTCTGAAGGGACAGATGAAGGCTTTCAACTCGTCTACACCA
Seq A exon
GTTTTGAACTTTCGCATTGTGAAGACCCAGGCATTCCACAGTTTGGATATAAGATCAGTGACCAAGGCCACTTTGCAGGCAGCACCATCATCTATGGATGCAATCCTGGCTACACTCTCCATGGAAGCAGCCTTCTCAAGTGTATGACCGGGGAGAGAAGGGCCTGGGACTACCCTCTGCCTTCTTGCATTG
Seq C2 exon
CTGAATGTGGAGGCCGTTTCAAAGGAGAATCATCAGGAAGGATCTTGTCCCCTGGCTATCCCTTTCCTTATGATAATAACCTTCGCTGTATGTGGATGATTGAAGTAGATCCAGGAAACATTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-'25-31,'25-30,27-31=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCTATCTTCTTTTGGTT
R:
TACAATGTTTCCTGGATCTACTTCA
Band lengths:
226-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]