RnoEX0003314 @ rn6
Exon Skipping
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:87029508-87035805:-
Coord C1 exon
chr7:87035614-87035805
Coord A exon
chr7:87031525-87031651
Coord C2 exon
chr7:87029508-87029710
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACGTTGCTATATTTCACCAGCTG
3' ss Score
6.03
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTTTGAACTTTCGCATTGTGAAGACCCAGGCATTCCACAGTTTGGATATAAGATCAGTGACCAAGGCCACTTTGCAGGCAGCACCATCATCTATGGATGCAATCCTGGCTACACTCTCCATGGAAGCAGCCTTCTCAAGTGTATGACCGGGGAGAGAAGGGCCTGGGACTACCCTCTGCCTTCTTGCATTG
Seq A exon
CTGAATGTGGAGGCCGTTTCAAAGGAGAATCATCAGGAAGGATCTTGTCCCCTGGCTATCCCTTTCCTTATGATAATAACCTTCGCTGTATGTGGATGATTGAAGTAGATCCAGGAAACATTGTAAG
Seq C2 exon
CCTACAGTTTCTCGCTTTCGATACAGAAGCATCCCATGATATACTTCGAGTTTGGGATGGTCCGCCAGAAAACGAGATGCTATTAAAGGAAGTTAGTGGATCTCTTATTCCTGATGGAATTCATAGCACTCTCAACATAGTGACTATCCAGTTTGATACGGACTTTTATATCAGCAAATCTGGATTTGCCATTCAGTTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-'27-32,'27-31,28-32
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGCATTGTGAAGACCCAGG
R:
CGGACCATCCCAAACTCGAAG
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]