MmuEX6053506 @ mm9
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47712892-47720376:-
Coord C1 exon
chr15:47720185-47720376
Coord A exon
chr15:47715078-47715204
Coord C2 exon
chr15:47712892-47713094
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGTGACTATATCTCACCAGCTG
3' ss Score
5.76
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTTTGAACTTTCTCATTGTGAAGACCCAGGCATTCCACAGTTTGGATATAAGATCAGTGACCAAGGTCACTTTGCTGGCAGCACCATCATCTATGGATGCAATCCAGGCTATACTCTCCATGGAAGCAGCCTTCTGAAGTGCATGACTGGAGAGAGAAGGGCCTGGGACTACCCTCTACCTTCCTGTATTG
Seq A exon
CTGAATGTGGCGGCCGTTTCAAGGGAGAATCATCAGGAAGGATCTTGTCCCCTGGCTATCCCTTTCCATATGATAATAACCTTCGCTGCATGTGGATGATCGAAGTAGATCCAGGAAACATTGTAAG
Seq C2 exon
CCTACAGTTTCTTGCTTTCGATACAGAAGCCTCACATGATATACTCCGAGTTTGGGATGGTCCACCAGAAAACGAGATGCTATTAAAGGAAGTTAGTGGATCTCTTATTCCTGATGGAATTCACAGCACCCTCAACATAGTGACTATCCAATTTGATACGGACTTTTATATCAGCAAATCTGGATTCGCAATTCAGTTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'40-29,'40-28,41-29=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.7)
A:
PF0043115=CUB=PU(37.4=93.0)
C2:
PF0043115=CUB=PD(61.7=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACCCAGGCATTCCACAG
R:
CGTTTTCTGGTGGACCATCCC
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: