MmuEX6053506 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47881346-47888830:-
Coord C1 exon
chr15:47888639-47888830
Coord A exon
chr15:47883532-47883658
Coord C2 exon
chr15:47881346-47881548
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGTGACTATATCTCACCAGCTG
3' ss Score
5.76
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTTTGAACTTTCTCATTGTGAAGACCCAGGCATTCCACAGTTTGGATATAAGATCAGTGACCAAGGTCACTTTGCTGGCAGCACCATCATCTATGGATGCAATCCAGGCTATACTCTCCATGGAAGCAGCCTTCTGAAGTGCATGACTGGAGAGAGAAGGGCCTGGGACTACCCTCTACCTTCCTGTATTG
Seq A exon
CTGAATGTGGCGGCCGTTTCAAGGGAGAATCATCAGGAAGGATCTTGTCCCCTGGCTATCCCTTTCCATATGATAATAACCTTCGCTGCATGTGGATGATCGAAGTAGATCCAGGAAACATTGTAAG
Seq C2 exon
CCTACAGTTTCTTGCTTTCGATACAGAAGCCTCACATGATATACTCCGAGTTTGGGATGGTCCACCAGAAAACGAGATGCTATTAAAGGAAGTTAGTGGATCTCTTATTCCTGATGGAATTCACAGCACCCTCAACATAGTGACTATCCAATTTGATACGGACTTTTATATCAGCAAATCTGGATTCGCAATTCAGTTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'70-39,'70-38,71-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.7)
A:
PF0043115=CUB=PU(37.4=93.0)
C2:
PF0043115=CUB=PD(61.7=95.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACCCAGGCATTCCACAG
R:
CGTTTTCTGGTGGACCATCCC
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types