GgaEX6022112 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139144124-139150567:-
Coord C1 exon
chr2:139150376-139150567
Coord A exon
chr2:139145030-139145156
Coord C2 exon
chr2:139144124-139144326
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTATGTATTGTTTTCATTAGCTG
3' ss Score
5.68
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
GTTTTGAACTTTCACATTGTGAAGACCCCGGTGTGCCCCAGTTTGGACATAAAATCAGCGACCAAGGTCACTTTGCTGGAAGCATTATCATTTATGGATGCAATCCAGGCTACACACTCCATGGAAGTAGCCTTCTAAAGTGTATGACTGGAGAAAGAAGGGCATGGGACTATCCTCTACCATCATGTATTG
Seq A exon
CTGAGTGTGGAGGCCGTTTTAAAGGAGAATCTTCAGGAAGAATCTTATCTCCTGGCTATCCTTTTCCCTATGATAACAATCTGCGTTGCATGTGGGTGATTGAAGTAGATCCAGGAAATATTGTCAG
Seq C2 exon
CCTCCAGTTTCTTGCTTTTGATACTGAGGCATCACATGATATTCTACGAGTTTGGGATGGACCACCTGAGAATGAGATGTTACTCAAGGAAATTAGTGGATCTCTAGTTCCTGAAGGCATTCACAGTACACTCAACATAGTAACAATCCAGTTTGACACAGATTTTTATATCAGCAAATCTGGGTTTGCCATACAGTTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.7)
A:
PF0043115=CUB=PU(37.4=93.0)
C2:
PF0043115=CUB=PD(61.7=95.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGTGAAGACCCCGGTGTG
R:
TCAGGTGGTCCATCCCAAACT
Band lengths:
247-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]