DreEX6042855 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47905774-47923270:-
Coord C1 exon
chr16:47923079-47923270
Coord A exon
chr16:47910303-47910429
Coord C2 exon
chr16:47905774-47905976
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTGATCTATTGTAGCGG
3' ss Score
8.68
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTTTTGAACTTTCTCATTGTGACGAACCCGGTGTGCCTCAATTTGGATCCAAAGTCAGCGACCAAGGCCACTTTGCAGGCAGTGTGGTCACGTATCACTGTGATCCTGGATACAGTCTCCATGGCAGCAGCATTTTGAGATGCATGACGGGCGAGAGACGCACGTGGGACCATCCGCTCCCCTCCTGCATAG
Seq A exon
CGGAGTGTGGGGGAAGTTTTAAAGGTGAGTCATCTGGACGGATACTGTCTCCCGGATACCCGTTTCCGTACGACAACAACCTCCGCTGCACGTGGACCATCGAGGTGGACTCTGGTAACACTGTCAG
Seq C2 exon
TTTGCAGTTCCTGGCATTTGATACTGAAGCATCGCATGATATCCTGAAGGTTTGGGATGGACACCCGGAAAATGAGATGGCGCTGAAGGAAGTGAGCGGTTCACTGTTACCTGACGGCATTCACAGCACTCTCAACGTGGTCACCATCCAGTTTGAGACTGACTTCTACATTAGCAAATCTGGTTTTGCCATTGACTTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.7)
A:
PF0043115=CUB=PU(37.4=93.0)
C2:
PF0043115=CUB=PD(61.7=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTGTGCCTCAATTTGGAT
R:
GCCATCTCATTTTCCGGGTGT
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]