BtaEX6062838 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:54044929-54053288:+
Coord C1 exon
chr14:54044929-54045120
Coord A exon
chr14:54051287-54051413
Coord C2 exon
chr14:54053086-54053288
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTGAATTAATTTTTTCTAGCTG
3' ss Score
4.73
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTTTTGAACTTTCACATTGTGAGGATCCTGGAATTCCACAATTTGGATACAAAATCAGCGACCAAGGGCATTTTGCTGGTAGCACTATCATTTACGGATGCAATCCAGGCTACACTCTCCATGGAAGCAGCCTTCTGAAGTGCATGACAGGGGAGAGAAGGGCATGGGACTATCCTCTGCCATCCTGTATTG
Seq A exon
CTGAATGTGGAGGTCGTTTTAAAGGAGAATCATCAGGAAGAATTTTATCTCCTGGTTATCCCTTTCCATATGACAATAATCTGCGTTGCATGTGGATGATTGAGGTAGATCCAGGAAACATTGTCAG
Seq C2 exon
CCTACAGTTTCTTGCTTTTGATACGGAAGCATCACATGATATACTCCGAGTTTGGGATGGTCCGCCTGAAAACGAGATGCTTTTAAAGGAAATCAGTGGGTCTCTGATTCCCGAAGGAATCCATAGCACTCTCAACGTAGTGACCATTCAGTTCGACACAGATTTTTATATCAGCAAATCTGGATTTGCAATTCAGTTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.7)
A:
PF0043115=CUB=PU(37.4=93.0)
C2:
PF0043115=CUB=PD(61.7=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCGACCAAGGGCATTTT
R:
TCCTTCGGGAATCAGAGACCC
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]