DreEX6042854 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47910303-47937424:-
Coord C1 exon
chr16:47937268-47937424
Coord A exon
chr16:47923079-47923270
Coord C2 exon
chr16:47910303-47910429
Length
192 bp
Sequences
Splice sites
3' ss Seq
TGCTTGTTGTTCTCCTTCAGGTT
3' ss Score
11.51
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
TTGTATGACGGTCCGGACAACACTGCAGATGTTCTAGGAGCTTTCTCTGGGTCCTCCATGTTGAGTCAGTCACTGACCAGCACGTCGAATCACCTGTGGCTTGAGTTTTATTCTGACCAAGAGGACACGGCTGAGGGATTCAAGCTTGCTTACACTA
Seq A exon
GTTTTGAACTTTCTCATTGTGACGAACCCGGTGTGCCTCAATTTGGATCCAAAGTCAGCGACCAAGGCCACTTTGCAGGCAGTGTGGTCACGTATCACTGTGATCCTGGATACAGTCTCCATGGCAGCAGCATTTTGAGATGCATGACGGGCGAGAGACGCACGTGGGACCATCCGCTCCCCTCCTGCATAG
Seq C2 exon
CGGAGTGTGGGGGAAGTTTTAAAGGTGAGTCATCTGGACGGATACTGTCTCCCGGATACCCGTTTCCGTACGACAACAACCTCCGCTGCACGTGGACCATCGAGGTGGACTCTGGTAACACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(47.2=94.3)
A:
PF0008415=Sushi=WD(100=87.7)
C2:
PF0043115=CUB=PU(37.4=93.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGACGGTCCGGACAACAC
R:
CAGCGGAGGTTGTTGTCGTAC
Band lengths:
243-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]