GgaEX0023750 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139145030-139157426:-
Coord C1 exon
chr2:139157270-139157426
Coord A exon
chr2:139150376-139150567
Coord C2 exon
chr2:139145030-139145156
Length
192 bp
Sequences
Splice sites
3' ss Seq
AATGTGGTTTTCTACCACAGGTT
3' ss Score
8.96
5' ss Seq
TTGGTAGTA
5' ss Score
-1.33
Exon sequences
Seq C1 exon
ATCTATGATGGCAAAGACAATACTGCTCACCTGCTGGGTGCGTATACTGGTGCATCATTAAGAGGACTAACGCTAAGTAGTACTTCAAATCACTTATGGTTGGAATTCAACTCAGACATGGAGGGCACTGATGAAGGCTTTCAGCTTGTTTATACCA
Seq A exon
GTTTTGAACTTTCACATTGTGAAGACCCCGGTGTGCCCCAGTTTGGACATAAAATCAGCGACCAAGGTCACTTTGCTGGAAGCATTATCATTTATGGATGCAATCCAGGCTACACACTCCATGGAAGTAGCCTTCTAAAGTGTATGACTGGAGAAAGAAGGGCATGGGACTATCCTCTACCATCATGTATTG
Seq C2 exon
CTGAGTGTGGAGGCCGTTTTAAAGGAGAATCTTCAGGAAGAATCTTATCTCCTGGCTATCCTTTTCCCTATGATAACAATCTGCGTTGCATGTGGGTGATTGAAGTAGATCCAGGAAATATTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'24-25,'24-24,25-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(47.2=94.3)
A:
PF0008415=Sushi=WD(100=87.7)
C2:
PF0043115=CUB=PU(37.4=93.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATACTGCTCACCTGCTGGG
R:
TCAATCACCCACATGCAACGC
Band lengths:
243-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]