MmuEX6053505 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47883532-47899865:-
Coord C1 exon
chr15:47899709-47899865
Coord A exon
chr15:47888639-47888830
Coord C2 exon
chr15:47883532-47883658
Length
192 bp
Sequences
Splice sites
3' ss Seq
AATTTGTATTGCTCTCTTAGGTT
3' ss Score
7.52
5' ss Seq
TTGGTAGGA
5' ss Score
5
Exon sequences
Seq C1 exon
ATTTATGATGGAAAAGATAAAACAACGCACCTACTGGGTGCTTTCACGGGTGCGTCTATGCGAGGACTGACACTAAGCAGCACATCAAATCAGCTCTGGCTAGAGTTTAATTCTGACTCTGAAGGGACAGATGAAGGCTTTCAACTTGTCTACACCA
Seq A exon
GTTTTGAACTTTCTCATTGTGAAGACCCAGGCATTCCACAGTTTGGATATAAGATCAGTGACCAAGGTCACTTTGCTGGCAGCACCATCATCTATGGATGCAATCCAGGCTATACTCTCCATGGAAGCAGCCTTCTGAAGTGCATGACTGGAGAGAGAAGGGCCTGGGACTACCCTCTACCTTCCTGTATTG
Seq C2 exon
CTGAATGTGGCGGCCGTTTCAAGGGAGAATCATCAGGAAGGATCTTGTCCCCTGGCTATCCCTTTCCATATGATAATAACCTTCGCTGCATGTGGATGATCGAAGTAGATCCAGGAAACATTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'69-38,'69-36,70-38
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(47.2=94.3)
A:
PF0008415=Sushi=WD(100=87.7)
C2:
PF0043115=CUB=PU(37.4=93.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAACAACGCACCTACTGGG
R:
CGATCATCCACATGCAGCGAA
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types