BtaEX6062839 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:54029122-54051413:+
Coord C1 exon
chr14:54029122-54029278
Coord A exon
chr14:54044929-54045120
Coord C2 exon
chr14:54051287-54051413
Length
192 bp
Sequences
Splice sites
3' ss Seq
AATTTATATTCTTCTCATAGGTT
3' ss Score
8.17
5' ss Seq
TTGGTAGGA
5' ss Score
5
Exon sequences
Seq C1 exon
ATTTATGATGGAAAAGATAAAACAACTCATCTCCTAGGTGCTTTTACTGGTGCGTCTATGCGAGGACTGACACTTAGTAGTACTTCAAACCAGCTCTGGCTAGAATTTAATTCTGATTCTGAAGGGACGGATGAAGGCTTTCAACTTGTCTATACCA
Seq A exon
GTTTTGAACTTTCACATTGTGAGGATCCTGGAATTCCACAATTTGGATACAAAATCAGCGACCAAGGGCATTTTGCTGGTAGCACTATCATTTACGGATGCAATCCAGGCTACACTCTCCATGGAAGCAGCCTTCTGAAGTGCATGACAGGGGAGAGAAGGGCATGGGACTATCCTCTGCCATCCTGTATTG
Seq C2 exon
CTGAATGTGGAGGTCGTTTTAAAGGAGAATCATCAGGAAGAATTTTATCTCCTGGTTATCCCTTTCCATATGACAATAATCTGCGTTGCATGTGGATGATTGAGGTAGATCCAGGAAACATTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(47.2=94.3)
A:
PF0008415=Sushi=WD(100=87.7)
C2:
PF0043115=CUB=PU(37.4=93.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTTTTACTGGTGCGTCT
R:
ACAATGTTTCCTGGATCTACCTCA
Band lengths:
245-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]