DreEX0068144 @ danRer10
Exon Skipping
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14726440-14729199:-
Coord C1 exon
chr17:14729085-14729199
Coord A exon
chr17:14726665-14726913
Coord C2 exon
chr17:14726440-14726563
Length
249 bp
Sequences
Splice sites
3' ss Seq
GTGCTGTTGTGTTTGCACAGGAT
3' ss Score
8.41
5' ss Seq
AATGTAAAA
5' ss Score
-0.78
Exon sequences
Seq C1 exon
TGCCTGCTTGAAAACGAGCGTCTTGAGAACATCTTCACAGACCCACTGTATAATCAGTTCATCACCGACATCACCACACTGCTCAAGGACTGGGTCAACAAAGTGTCACCTGGAG
Seq A exon
GATACATGCACTCGCGGGTGGAGGAGGAATACCTCTGGGAGTGTAAGCAGTTGGGAGCTCTGTCTCCTATTGTTCTGCTTAACACGCTGCTGTTTTTCGGATCCAAACTGCTCAACCTGAAAACGGTTGAAGAGCATCGACGGCTCGCCTTTTCCAATGTCTCCCACTGCTCCAAGACCACCAAAAGTGGCTTGACCTCTTACCTTCGCTTTAGGCTACCTAACAAAGAGGAGGAAAAAGAGAAGAAAT
Seq C2 exon
CACCAGCTGGGAAGAGGAAGAGAGATGAAGAGAGCGTGGAGGAGGAGTTTTTGGAGATGCCGGAGAATGTGGAAAATCCTTTACGCTGCCCTGTCAGACTCTATGAGTTCTATCTCTCCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681-'28-41,'28-40,29-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.452
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
PF120123=DUF3504=PU(48.3=98.8)
C2:
PF120123=DUF3504=FE(23.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGCTTGAAAACGAGCG
R:
TTGGAGAGATAGAACTCATAGAGTCT
Band lengths:
236-485
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]