GgaEX6025134 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4671104-4673202:-
Coord C1 exon
chr23:4673091-4673202
Coord A exon
chr23:4671557-4671805
Coord C2 exon
chr23:4671104-4671233
Length
249 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCACATTGTTTCTAGGTT
3' ss Score
8.92
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TACCTGTTTGAGAATGGTAGAATAGATAACATTTTTACCGAGCCCTATTCCAGGTTTATGATTGAACTTACAAAACTTTTGAAAATCTGGGAACCTACAATTCTTCCAAATG
Seq A exon
GTTATATGTTCTCAAGAATAGAAGAGGAACACTTGTGGGAATGTAAACAGCTGGGTGCATATTCCCCCATAGTTTTACTGAACACACTGCTATTCTTCAACACCAAATACTTTCAACTAAAGAATGTCAGTGAGCACCTGAAGCTGTCCTTTGCCCACGTCATGAGACGGACCCGGACTCTGAAGTATAATACTAAGACAACATATTTACGTTTTTTCCCACCCTTTCAAAAACAAGAGGTAGAATCAG
Seq C2 exon
ATAAACTGTCTGTAGGCAAAAGGAAACGCGGTGAAGATGAGGAGATTTCAACAGCAGTGGAAATGGCTGAAAATGCAGATAATCCCCTGAGATGTCCAGTGCGACTTTATGAATTTTACTTGTCAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-'35-38,'35-37,36-38=AN
Average complexity
A_S
Mappability confidence:
83%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.295
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
PF120123=DUF3504=PU(47.7=98.8)
C2:
PF120123=DUF3504=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTTTGAGAATGGTAGAATAGA
R:
TGACAAGTAAAATTCATAAAGTCGCA
Band lengths:
236-485
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]