RnoEX0102058 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144881531-144891993:-
Coord C1 exon
chr5:144891842-144891993
Coord A exon
chr5:144884364-144884615
Coord C2 exon
chr5:144881531-144881660
Length
252 bp
Sequences
Splice sites
3' ss Seq
GCTGTTGTCCACCCCGCTAGGTT
3' ss Score
7.51
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TCCGCTCTATGAAACTGAAGGAAGATATTCTGTCCTGCACTTTTTCTGAGCTGAGTCTGGGCTTATGCCAGTTTATCCAAGAGGTGCGGAGACCCAATGGTGAAAAGTATGACCCAGACAGCATCTTATACCTGTGCCTTGGAATTCAGCAG
Seq A exon
GTTACATGTTCTCCCGCATCGAAGAAGAGCACCTGTGGGAGTGTAAGCAGCTGGGTGCCTACTCGCCCATTGTCCTGTTGAACACCCTCCTGTTTTTCAATACCAAATACTTCCAACTGAAGAATGTCACCGAGCACTTGAAGCTCTCCTTTGCCCACGTGATGAGGCGGACCAGGACTCTGAAGTACAGTACCAAGATGACGTACCTGAGGTTCTTCCCGCCGCCGCCACAGAAGCAAGAGTCGGAGCCAG
Seq C2 exon
ATAAACTAACTATTGGCAAGAGGAAACGAAATGAAGATGAGGAGGCTCCAGTGGGTGTGGAGATGGCAGAGAACACGGACAATCCACTGAGGTGCCCTGTCCGGCTTTACGAGTTTTACCTGTCTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
PF120123=DUF3504=PU(48.0=98.8)
C2:
PF120123=DUF3504=FE(24.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCTCTATGAAACTGAAGGA
R:
AGACAGGTAAAACTCGTAAAGCCG
Band lengths:
277-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]