DreEX6073945 @ danRer10
Exon Skipping
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40521330-40523839:+
Coord C1 exon
chr19:40521330-40521444
Coord A exon
chr19:40523396-40523629
Coord C2 exon
chr19:40523710-40523839
Length
234 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTTTTCAGGTT
3' ss Score
11.97
5' ss Seq
CCGGTCAGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
TACCTGTTTGAGAACAGTCGAATGGAGAACATCTTTGCAGACGTCTTCTACACTAAATTCTGCCAGGAAATGACCAACATACTCCGTGACTGGAGACCAACTGTTTTGCCCAGTG
Seq A exon
GTTATATTCACTCTCGTGTGGAAGAGGAGTATCTGTGGGACTGTAAGCAGCTCGGGGCCTTTTCACCTGGAGTTCTGCTCAACACTTTAATCTATTTCTTCACAAAATACTTTAACTACAGGACAGCGGAGCAGCACCGTCTCCTCTCTTTCGGCCACATCGTGCGCTGCTCTCGGAGCAAAGGCAACACAAAAGTGGCCTGTTTGCGTTTCTATCCTCCGAAAGATGAAGCCG
Seq C2 exon
ACGGCGTTCCGGCAAAGAGGAGGAAAGAAGAGGGAGAGGAGGAGGATGAAACTGTATATGAGATAAAGGAGAATTCAGACAATCCTCTCCGCTGTCCTGTCAGGCTCTATGAGTTCTATCTCTCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823-'30-39,'30-38,31-39=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
PF120123=DUF3504=PU(46.2=98.7)
C2:
PF120123=DUF3504=FE(25.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGAGAACAGTCGAATGGAGA
R:
TGAGAGATAGAACTCATAGAGCCTGA
Band lengths:
236-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]