HsaEX6029933 @ hg19
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35879573-35884173:+
Coord C1 exon
chr1:35879573-35879684
Coord A exon
chr1:35881067-35881315
Coord C2 exon
chr1:35884044-35884173
Length
249 bp
Sequences
Splice sites
3' ss Seq
GTACCCCTTCTTCTGTCTAGGTT
3' ss Score
8.67
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
TACCTGTTTGAAAATGGTAGAATAGATAACATTTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTACCAAACTCTTGAAAATATGGGAACCTACAATACTTCCTAATG
Seq A exon
GTTACATGTTCTCTCGCATTGAGGAAGAGCATTTGTGGGAGTGCAAACAGCTGGGCGCTTACTCACCAATCGTCCTTTTAAACACCCTCCTTTTCTTCAATACCAAATACTTCCAACTAAAGAATGTTACTGAGCACTTGAAGCTTTCCTTTGCCCATGTGATGAGACGGACCAGGACTCTGAAGTACAGTACCAAGATGACATATCTGAGGTTCTTCCCACCTTTACAGAAGCAGGAGTCAGAACCAG
Seq C2 exon
ATAAACTGACTGTTGGCAAGAGGAAACGAAATGAAGATGATGAGGTTCCAGTGGGGGTGGAGATGGCAGAGAATACTGACAATCCACTAAGATGCCCAGTCCGACTTTATGAGTTTTACCTGTCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-'46-49,'46-48,47-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.485
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
PF120123=DUF3504=PU(47.7=98.8)
C2:
PF120123=DUF3504=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACATTTTTACTGAGCCCTATTCCA
R:
TTGACAGGTAAAACTCATAAAGTCGG
Band lengths:
212-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)