Special

MmuEX0053936 @ mm10

Exon Skipping

Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126865497-126870294:-
Coord C1 exon
chr4:126870183-126870294
Coord A exon
chr4:126868717-126868965
Coord C2 exon
chr4:126865497-126865626
Length
249 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCCGCCCTGTCTAGGTT
3' ss Score
9.78
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
TACCTATTTGAAAATGGTAGAATAGATAACATTTTTACGGAGCCCTATTCCAGATTTATGATTGAACTTACCAAACTCTTGAAAATATGGGAACCTACAATACTTCCTAATG
Seq A exon
GTTACATGTTCTCCCGCATTGAAGAAGAGCATCTGTGGGAGTGCAAACAGCTGGGCGCTTACTCGCCCATTGTCCTGTTAAACACCCTCCTTTTTTTCAATACCAAATACTTCCAACTAAGGAATGTTACTGAGCACTTGAAGCTGTCCTTTGCCCACGTGATGCGCCGGACCAGGACTCTGAAGTACAGCACCAAGATGACGTACCTGAGGTTCTTCCCGCCTTTACAGAAGCCGGAGTCAGAGCCAG
Seq C2 exon
ATAAGGTAACTATTGGCAAGAGGAAACGAAATGAAGACGACGAGGCCCCAGTGGGAGTGGAGATGGCAGAGAACACTGACAACCCGCTGAGGTGCCCGGTTCGGCTTTATGAGTTTTACCTGTCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-'62-58,'62-57,63-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.018 C2=0.534
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF120123=DUF3504=PU(0.1=0.0)

							
A:
PF120123=DUF3504=PU(47.7=98.8)

							
C2:
PF120123=DUF3504=FE(24.7=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000101714





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000120813
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr1:35415466-35415714 
ALTERNATIVE
HsaEX6029933
(ZMYM4)
Human
(hg19)
chr1:35881067-35881315 
HIGH PSI
HsaEX6029933
(ZMYM4)
Rat
(rn6)
chr5:144884364-144884615 
HIGH PSI
RnoEX0102058
(Zmym4)
Cow
(bosTau6)
chr3:110924685-110924933 
HIGH PSI
BtaEX6019011
(ZMYM4)
Chicken
(galGal4)
chr23:4301957-4302205 
HIGH PSI
GgaEX6025134
([1])
Chicken
(galGal3)
chr23:4671557-4671805 
HIGH PSI
GgaEX6025134
([2])
Zebrafish
(danRer10)
chr19:40523396-40523629 
HIGH PSI
DreEX6073945
(zmym4)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GAATAGATAACATTTTTACGGAGCCC

				
R: 
TTTGACAGGTAAAACTCATAAAGCCG

				
Band lengths: 
220-469

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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