DreEX0072298 @ danRer10
Exon Skipping
Gene
ENSDARG00000024708 | slc25a23b
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23b [Source:ZFIN;Acc:ZDB-GENE-040724-220]
Coordinates
chr3:34094690-34095331:+
Coord C1 exon
chr3:34094690-34094777
Coord A exon
chr3:34094955-34095066
Coord C2 exon
chr3:34095173-34095331
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATATTTCTTTCGTCTGTCAGCAT
3' ss Score
6.32
5' ss Seq
CTGGTTCAC
5' ss Score
-4.81
Exon sequences
Seq C1 exon
GTCACATAGACGTTCCAGAGATTCAGCTCTCCTTGCGCAGCCTTGGAGTGAATGTATCCACAGAGCAGGCCTCCAGAATCCTGCAAAG
Seq A exon
CATAGACAGAGATGGCACTATGACCATTGACTGGAATGAGTGGCGGGACCACTTTCTGTTTAACCCCTTGCACAACATGGAGGACATCGCCCACTACTGGAAACACTCTCTG
Seq C2 exon
ATGTTGGACATTGGAGAGCAGCTGACTGTGCCGGATGAGTTTTCAGAAAAGGAGCGTCGGTCTGGTGTTGTGTGGAGACAGCTGGTGGCCGGAGCAATGGCAGGAGCCGTGTCGCGAACAGGAACTGCCCCTTTGGACCGTCTGAAAGTTTTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024708-'3-4,'3-2,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(45.3=100)
A:
PF134991=EF-hand_7=PD(28.1=47.4)
C2:
PF0015322=Mito_carr=PU(35.9=62.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACATAGACGTTCCAGAGATTCA
R:
AGGAAAACTTTCAGACGGTCCA
Band lengths:
243-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]