DreEX0073460 @ danRer10
Exon Skipping
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23188376-23189059:+
Coord C1 exon
chr1:23188376-23188539
Coord A exon
chr1:23188667-23188699
Coord C2 exon
chr1:23188935-23189059
Length
33 bp
Sequences
Splice sites
3' ss Seq
TATGATTGGTGCATTTGTAGAGG
3' ss Score
4
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGCTCTGGGCGCAAACCCCCTGTACTGTGACTGTCACATGCAGTGGCTCTCTGACTGGGTAAAGAGTGGATACAAGGAGCCTGGCATCGCCCGCTGTACCGGTCCTGGAGACATGACTGACAAACTGCTGCTCACTACACCCTCTAAGAAATTCACATGCACAG
Seq A exon
AGGTGCCGGGGACTTGTGGTTTTCCTGTGCCAG
Seq C2 exon
GTCCAGTGGATGTAAGCATTTTGGCTAAATGTAACCCTTGCTTGTCCAATCCCTGCAAGAATGATGGGACCTGCAGTAACCATCCTGTAGATTTTTACAGATGCACCTGCCCGTATGGTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246_MULTIEX2-13/18=12-14
Average complexity
S
Mappability confidence:
99%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=12.5)
A:
NO
C2:
PF0000822=EGF=PU(87.5=66.7)
Main Inclusion Isoform:
ENSDART00000171951fB6130
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCTGCTCACTACACCCT
R:
GGTCCCATCATTCTTGCAGGG
Band lengths:
113-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]