GgaEX1053891 @ galGal4
Exon Skipping
Gene
ENSGALG00000014419 | SLIT2
Description
slit homolog 2 protein precursor [Source:RefSeq peptide;Acc:NP_001254004]
Coordinates
chr4:74590815-74596069:-
Coord C1 exon
chr4:74595906-74596069
Coord A exon
chr4:74593743-74593775
Coord C2 exon
chr4:74590815-74590939
Length
33 bp
Sequences
Splice sites
3' ss Seq
CATTCATGCCCTGCTTCTAGAGA
3' ss Score
6.72
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGCTATTGGAGCAAATCCTCTTTATTGTGATTGTAACATGCAATGGCTGTCTGACTGGGTAAAATCAGAATACAAAGAACCTGGTATTGCACGATGTGCTGGCCCTGGAGAAATGGCAGATAAACTTCTACTTACAACTCCATCTAAAAAATTTACTTGCCAAG
Seq A exon
AGATTCCAGGGCCTTGTGGTTTTCTGATACCAG
Seq C2 exon
GGCCCGTGGATGTCAATATTCTTGCTAAGTGTAACCCCTGCTTATCAAATCCATGTAAAAATGATGGAACCTGCAATAATGATCCAGTTGACTTCTATAGATGTACTTGCCCATATGGTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=12.5)
A:
NO
C2:
PF0000822=EGF=PU(87.5=66.7)
Main Inclusion Isoform:
ENSGALT00000037322fB12151
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGCTGGCCCTGGAGAAAT
R:
AGCAGGGGTTACACTTAGCAA
Band lengths:
113-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]