HsaEX6083753 @ hg19
Exon Skipping
Gene
ENSG00000145147 | SLIT2
Description
slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:11086]
Coordinates
chr4:20555428-20569009:+
Coord C1 exon
chr4:20555428-20555591
Coord A exon
chr4:20555931-20555963
Coord C2 exon
chr4:20568885-20569009
Length
33 bp
Sequences
Splice sites
3' ss Seq
AACATGTGCCCTGCTCCTAGGGC
3' ss Score
8.15
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGCAATTGGAGCCAACCCTCTTTACTGTGATTGTAACATGCAGTGGTTATCCGACTGGGTGAAGTCGGAATATAAGGAGCCTGGAATTGCTCGTTGTGCTGGTCCTGGAGAAATGGCAGATAAACTTTTACTCACAACTCCCTCCAAAAAATTTACCTGTCAAG
Seq A exon
GGCTGCCAGGGCCCTGTGGCTTCCTCATACCAG
Seq C2 exon
GTCCTGTGGATGTCAATATTCTAGCTAAGTGTAACCCCTGCCTATCAAATCCGTGTAAAAATGATGGCACATGTAATAGTGATCCAGTTGACTTTTACCGATGCACCTGTCCATATGGTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145147-'32-34,'32-33,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=12.5),PF0146319=LRRCT=WD(100=46.4)
A:
NO
C2:
PF0146319=LRRCT=PD(0.1=0.0),PF0000822=EGF=PU(87.5=65.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGGTCCTGGAGAAATGG
R:
AGGCAGGGGTTACACTTAGCT
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)