MmuEX0043692 @ mm10
Exon Skipping
Gene
ENSMUSG00000031558 | Slit2
Description
slit homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315205]
Coordinates
chr5:48249778-48256881:+
Coord C1 exon
chr5:48249778-48249941
Coord A exon
chr5:48250263-48250295
Coord C2 exon
chr5:48256757-48256881
Length
33 bp
Sequences
Splice sites
3' ss Seq
AACATGGCCCTGGCTCTCAGAGC
3' ss Score
5.71
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGCGATTGGAGCCAACCCTCTTTACTGTGATTGTAACATGCAGTGGTTATCCGACTGGGTGAAGTCGGAATATAAGGAACCTGGAATTGCACGCTGTGCCGGCCCTGGAGAAATGGCAGATAAATTATTACTCACTACTCCCTCCAAAAAATTTACATGTCAAG
Seq A exon
AGCTCCCAGGGCCCTGTGGCTTCCTAATCCCAG
Seq C2 exon
GTCCCGTGGATATCACTATTCAAGCCAAGTGTAATCCCTGCTTATCAAATCCATGTAAAAATGATGGCACCTGTAACAATGACCCCGTTGATTTTTATCGATGTACCTGCCCATATGGATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031558_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.7=12.5),PF0146319=LRRCT=WD(100=46.4)
A:
NO
C2:
PF0000822=EGF=PU(87.5=66.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGGAATTGCACGCTGTG
R:
GCAGGGATTACACTTGGCTTGA
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types