RnoEX0083468 @ rn6
Exon Skipping
Gene
ENSRNOG00000003840 | Slit2
Description
slit guidance ligand 2 [Source:RGD Symbol;Acc:69310]
Coordinates
chr14:66886293-66894182:-
Coord C1 exon
chr14:66894019-66894182
Coord A exon
chr14:66893663-66893695
Coord C2 exon
chr14:66886293-66886417
Length
33 bp
Sequences
Splice sites
3' ss Seq
AACATGGCCCTGGCTCTTAGGGC
3' ss Score
6.18
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGCAATTGGAGCCAACCCTCTTTACTGTGATTGTAACATGCAGTGGTTATCCGACTGGGTGAAGTCGGAATATAAGGAACCTGGAATTGCCCGCTGTGCCGGTCCCGGAGAAATGGCAGATAAATTGTTACTCACAACTCCCTCCAAAAAATTTACATGTCAAG
Seq A exon
GGCTCCCAGGGCCCTGTGGCTTCCTAATCCCAG
Seq C2 exon
GTCCTGTGGATGTTACTATTCAAGCCAAGTGTAACCCCTGCTTGTCAAATCCATGTAAAAATGATGGCACCTGTAACAATGACCCGGTGGATTTTTATCGATGCACCTGCCCATATGGTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003840_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=12.5)
A:
NO
C2:
PF0000822=EGF=PU(87.5=66.7)
Main Inclusion Isoform:
ENSRNOT00000005477fB13837
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCGGAGAAATGGCAGAT
R:
TGGATTTGACAAGCAGGGGTT
Band lengths:
117-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]