DreEX0073473 @ danRer10
Exon Skipping
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23183575-23186143:+
Coord C1 exon
chr1:23183575-23183643
Coord A exon
chr1:23184582-23184653
Coord C2 exon
chr1:23186072-23186143
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTGTTTTCTTGCAGTGA
3' ss Score
9.91
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CTATCTCGATGGCAACGAGTTCACACAAGTCCCTCTGGAACTATCCAATTATAAACACCTCACTCTCAT
Seq A exon
TGATTTGAGTAATAACCAGATCAGCACATTGTCCAACCACAGCTTCAGTAACATGTCCGAGCTGCTCACACT
Seq C2 exon
AATTTTAAGCTACAACAGATTAAGGTGTATTCCTGCAAAAGCGTTCGACGGCCTCAAGTCTCTGCGCTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246_MULTIEX2-9/18=8-10
Average complexity
S
Mappability confidence:
99%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=FE(48.9=100)
A:
PF127992=LRR_4=PD(42.6=80.0),PF138551=LRR_8=PU(8.2=20.0)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATGGCAACGAGTTCACAC
R:
AACAAGCGCAGAGACTTGAGG
Band lengths:
136-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]